Difference between revisions of "BioLib Staden io lib"

Latest revision as of 02:17, 23 September 2016

Staden io_lib is the support library for the Staden assembly programs (like gap4, trace, makescf...).

The call examples for Perl, Python and Ruby can be found in the apidoc.

BioLib maps the read and write functions for different trace formats as defined in the Read.h file:

/* Trace file formats */
#define TT_ERR -1
#define TT_UNK 0
#define TT_SCF 1
#define TT_ABI 2
#define TT_ALF 3
#define TT_PLN 4
#define TT_EXP 5
#define TT_CTF 6
#define TT_ZTR 7
#define TT_ZTR1 8
#define TT_ZTR2 9
#define TT_ZTR3 10
#define TT_BIO 11
#define TT_SFF 12
#define TT_ANY TT_UNK

so any format can be read, or converted to another using the Bio* languages.

• For the current API see Main Page#DOCUMENTION